L'unité MIG et l'unité MIAJ ont fusionné au 1er janvier 2015. Elles constituent dorénavant la nouvelle unité MaIAGE dont le site internet est accessible via l'URL suivante : http://maiage.jouy.inra.fr.

Valentin Loux HomePage

Valentin LouxProjects

Agmial

agmial

Pareo

Home Page

SurfG+

Research

Rafale Microbiogenomics Micro-obes Nano-Mubiop Biowic Migadi Meetac ExEco Surfing

Animation

co-animateur du PEPI Bio informatique et statistiques pour les données haut-débit
Coordinateur des groupes de travail bioi-informatiques du projet Investissement d'Avenir France-Génomique

Agenda

Consulter mes disponibilités en ligne

Publications

[Google Scholar]
 

2014

Juste C, Kreil DP, Beauvallet C, Guillot A, Vaca S, Carapito C, Mondot S, Sykacek P, Sokol H, Blon F, Lepercq P, Levenez F, Valot B, Carré W, Loux V, Pons N, David O, Schaëffer B, Lepage P, Martin P, Monnet V, Seksik P, Beaugerie L, Ehrlich SD, Gibrat J-F, Van Dorsselaer A, Doré J: Bacterial protein signals are associated with Crohn's disease. Gut 2014.

Falentin H, Naquin D, Loux V, Barloy-Hubler F, Loubiere P, Nouaille S, Lavenier D, Le Bourgeois P, François P, Schrenzel J, Hernandez D, Even S, Le Loir Y: Genome Sequence of Lactococcus lactis subsp. lactis bv. diacetylactis LD61. Genome Announc 2014, 2.

2013

Cotillard A, Kennedy SP, Kong LC, Prifti E, Pons N, Le Chatelier E, Almeida M, Quinquis B, Levenez F, Galleron N, Gougis S, Rizkalla S, Batto J-M, Renault P, ANR MicroObes consortium, Doré J, Zucker J-D, Clément K, Ehrlich SD, Blottiere H, Leclerc M, Juste C, de Wouters T, Lepage P, Fouqueray C, Basdevant A, Henegar C, Godard C, Fondacci M, Rohia A, Hajduch F, Weissenbach J, Pelletier E, Le Paslier D, Gauchi J-P, Gibrat J-F, Loux V, Carré W, Maguin E, van de Guchte M, Jamet A, Boumezbeur F, Layec S: Dietary intervention impact on gut microbial gene richness. Nature 2013, 500:585–588.

Cailliez-Grimal C, Chaillou S, Anba-Mondoloni J, Loux V, Afzal MI, Rahman A, Kergourlay G, Champomier-Vergès M-C, Zagorec M, Dalgaard P, Leisner JJ, Prévost H, Revol-Junelles A-M, Borges F: Complete Chromosome Sequence of Carnobacterium maltaromaticum LMA 28. Genome Announc 2013, 1.

Saraoui T, Parayre S, Guernec G, Loux V, Montfort J, Cam AL, Boudry G, Jan G, Falentin H: A unique in vivo experimental approach reveals metabolic adaptation of the probiotic Propionibacterium freudenreichii to the colon environment. BMC Genomics 2013, 14:911.

Cousin S, Creno S, Ma L, Clermont D, Loux V, Bizet C, Bouchier C: Draft Genome Sequence of Lactobacillus hominis Strain CRBIP 24.179T, Isolated from Human Intestine. Genome Announc 2013, 1.

Cousin S, Clermont D, Creno S, Ma L, Loux V, Bizet C, Bouchier C: Draft Genome Sequence of Lactobacillus pasteurii CRBIP 24.76T. Genome Announc 2013, 1.

Falentin H, Cousin S, Clermont D, Creno S, Ma L, Chuat V, Loux V, Rüdiger P, Bizet C, Bouchier C: Draft Genome Sequences of Five Strains of Lactobacillus acidophilus, Strain CIP 76.13T, Isolated from Humans, Strains CIRM-BIA 442 and CIRM-BIA 445, Isolated from Dairy Products, and Strains DSM 20242 and DSM 9126 of Unknown Origin. Genome Announc 2013, 1.

Cousin S, Loux V, Ma L, Creno S, Clermont D, Bizet C, Bouchier C: Draft Genome Sequences of Lactobacillus equicursoris CIP 110162T and Lactobacillus sp. Strain CRBIP 24.137, Isolated from Thoroughbred Racehorse Feces and Human Urine, Respectively. Genome Announc 2013, 1.

 

2012

Meslier V, Loux V, Renault P: Genome Sequence of Leuconostoc pseudomesenteroides Strain 4882, Isolated from a Dairy Starter Culture. J Bacteriol 2012, 194:6637.

Meslier V, Loux V, Renault P: Genome Sequence of Lactococcus raffinolactis Strain 4877, Isolated from Natural Dairy Starter Culture. J Bacteriol 2012, 194:6364.

Cousin S, Ma L, Creno S, Clermont D, Loux V, Bizet C, Bouchier C: Draft Genome Sequence of Lactobacillus gigeriorum CRBIP 24.85T, Isolated from a Chicken Crop. J Bacteriol 2012, 194:5973. 

Françoise Irlinger, Valentin Loux, Pascal Bento, Jean-François Gibrat, Cécile Straub, Pascal Bonnarme, Sophie Landaud, and Christophe Monnet. Genome Sequence of Staphylococcus equorum subsp. equorum Mu2, Isolated from a French Smear-Ripened Cheese. Journal of Bacteriology, 194(18):5141-5142, September 2012. [ DOI | http ]

Marion Dalmasso, Julie Aubert, Sergine Even, Hélène Falentin, Marie-Bernadette Maillard, Sandrine Parayre, Valentin Loux, Jarna Tanskanen, and Anne Thierry. Propionibacterium freudenreichii accumulates intracellular glycogen and trehalose in conditions mimicking cheese ripening in the cold. Applied and Environmental Microbiology, June 2012. [ DOI|http ]

Paul Barbier, Armel Houel, Valentin Loux, Julie Poulain, Jean-François Bernardet, Marie Touchon, and Eric Duchaud. Complete genome sequence of Flavobacterium indicum GPSTA100-9T, isolated from warm spring water. Journal of Bacteriology, 194(11):3024-3025, June 2012. [ DOI|http ]

Sophie Schbath, Véronique Martin, Matthias Zytnicki, Julien Fayolle, Valentin Loux, and Jean-François Gibrat. Mapping reads on a genomic sequence: an algorithmic overview and a practical comparative analysis. Journal of Computational Biology, 19(6):796-813, June 2012. [ DOI|http ]

Olivier Grépinet, Aurore Rossignol, Valentin Loux, Hélène Chiapello, Annie Gendrault, Jean-François Gibrat, Philippe Velge, and Isabelle Virlogeux-Payant. Genome Sequence of the Invasive Salmonella enterica subsp. enterica Serotype Enteritidis Strain LA5. Journal of Bacteriology, 194(9):2387-2388, May 2012. [ DOI|http ]

Olivier Grépinet, Zineb Boumart, Isabelle Virlogeux-Payant, Valentin Loux, Hélène Chiapello, Annie Gendrault, Jean-François Gibrat, Marianne Chemaly, and Philippe Velge. Genome Sequence of the Persistent Salmonella enterica subsp. enterica Serotype Senftenberg Strain SS209. Journal of Bacteriology, 194(9):2385-2386, May 2012. [ DOI|http ]

Myriam Amari, Sandrine Laguerre, Marlène Vuillemin, Hervé Robert, Valentin Loux, Christophe Klopp, Sandrine Morel, Bruno Gabriel, Magali Remaud-Siméon, Valérie Gabriel, Claire Moulis, and Catherine Fontagné-Faucher. Genome Sequence of Weissella confusa LBAE C39-2, Isolated from a Wheat Sourdough. Journal of Bacteriology, 194(6):1608-1609, March 2012. [ DOI|http ]

Sandrine Laguerre, Myriam Amari, Marlène Vuillemin, Hervé Robert, Valentin Loux, Christophe Klopp, Sandrine Morel, Bruno Gabriel, Magali Remaud-Siméon, Valérie Gabriel, Claire Moulis, and Catherine Fontagné-Faucher. Genome Sequences of Three Leuconostoc citreum Strains, LBAE C10, LBAE C11, and LBAE E16, Isolated from Wheat Sourdoughs. Journal of Bacteriology, 194(6):1610-1611, March 2012. [ DOI|http ]

Christophe Monnet, Valentin Loux, Pascal Bento, Jean-François Gibrat, Cécile Straub, Pascal Bonnarme, Sophie Landaud, and Françoise Irlinger. Genome Sequence of Corynebacterium casei UCMA 3821, Isolated from a Smear-Ripened Cheese. Journal of Bacteriology, 194(3):738-739, February 2012. [ DOI|http ]

2011
Christine Delorme, Claire Bartholini, Mélanie Luraschi, Nicolas Pons, Valentin Loux, Mathieu Almeida, Eric Guedon, Jean-François Gibrat, and Pierre Renault. Complete genome sequence of the pigmented Streptococcus thermophilus strain JIM8232. Journal of Bacteriology, 193(19):5581-5582, October 2011. [ DOI|http ]

Marie Touchon, Paul Barbier, Jean-François Bernardet,
Valentin Loux, Benoit Vacherie, Valérie Barbe, Eduardo P C Rocha, and Eric Duchaud. Complete genome sequence of the fish pathogen Flavobacterium branchiophilum. Applied and Environmental Microbiology, pages AEM.05625-11v1, September 2011. [ DOI|http ]

Eric Guedon, Christine Delorme, Nicolas Pons, Corinne Cruaud,
Valentin Loux, Arnaud Couloux, Celine Gautier, Nicolas Sanchez, Severine Layec, Nathalie Galleron, Mathieu Almeida, Maarten van de Guchte, Sean P. Kennedy, S Dusko Ehrlich, Jean-François Gibrat, Patrick Wincker, and Pierre Renault. Complete Genome Sequence of the Commensal Streptococcus salivarius Strain JIM8777. Journal of Bacteriology, 193(18):5024, September 2011. [ DOI|http ]

Christine Delorme, Eric Guedon, Nicolas Pons, Corinne Cruaud, Arnaud Couloux, Valentin Loux, Hélène Chiapello, Claire Poyart, Celine Gautier, Nicolas Sanchez, Mathieu Almeida, Sean P. Kennedy, S Dusko Ehrlich, Jean-François Gibrat, Patrick Wincker, and Pierre Renault. Complete genome sequence of the clinical Streptococcus salivarius strain CCHSS3. Journal of Bacteriology, 193(18):5041-5042, September 2011. [ DOI|http ]

Agnès Hébert, Marie-Pierre Forquin-Gomez, Aurélie Roux, Julie Aubert, Christophe Junot, Valentin Loux, Jean-François Heilier, Pascal Bonnarme, Jean-Marie Beckerich, and Sophie Landaud. Exploration of sulfur metabolism in the yeast Kluyveromyces lactis. Applied Microbiology and Biotechnology, 91(5):1409-1423, September 2011. [ DOI|http ]

Thomas Lacroix, Valentin Loux, Annie Gendrault, Jean-François Gibrat, and Hélène Chiapello. CompaGB: An open framework for genome browsers comparison. BMC Research Notes, 4:133, 2011. [ DOI|http ]

2010

Alain Mazé, Grégory Boël, Manuel Zúñiga, Alexa Bourand, Valentin Loux, Maria Jesus Yebra, Vicente Monedero, Karine Correia, Noémie Jacques, Sophie Beaufils, Sandrine Poncet, Philippe Joyet, Eliane Milohanic, Serge Casarégola, Yanick Auffray, Gaspar Pérez-Martínez, Jean-François Gibrat, Monique Zagorec, Christof Francke, Axel Hartke, and Josef Deutscher. Complete genome sequence of the probiotic Lactobacillus casei strain BL23. Journal of Bacteriology, 192(10):2647-2648, May 2010. [ DOI|http ]

Jasna Beganović, Alain Guillot, Maarten van de Guchte, Anne Jouan, Christophe Gitton, Valentin Loux, Karine Roy, Sylvie Huet, Hervé Monod, and Véronique Monnet. Characterization of the insoluble proteome of Lactococcus lactis by SDS-PAGE LC-MS/MS leads to the identification of new markers of adaptation of the bacteria to the mouse digestive tract. Journal of proteome research, 9(2):677-688, February 2010. [ DOI|http ]

Christophe Monnet, Valentin Loux, Jean-François Gibrat, Eric Spinnler, Valérie Barbe, Benoit Vacherie, Frederick Gavory, Edith Gourbeyre, Patricia Siguier, Michael Chandler, Rayda Elleuch, Françoise Irlinger, and Tatiana Vallaeys. The arthrobacter arilaitensis Re117 genome sequence reveals its genetic adaptation to the surface of cheese. PLoS ONE, 5(11):e15489, 2010. [ DOI|http ]

Hélène Falentin, Stéphanie-Marie Deutsch, Gwenaël Jan, Valentin Loux, Anne Thierry, Sandrine Parayre, Marie-Bernadette Maillard, Julien Dherbécourt, Fabien J Cousin, Julien Jardin, Patricia Siguier, Arnaud Couloux, Valérie Barbe, Benoit Vacherie, Patrick Wincker, Jean-Fran cois Gibrat, Claude Gaillardin, and Sylvie Lortal. The complete genome of Propionibacterium freudenreichii CIRM-BIA1, a hardy actinobacterium with food and probiotic applications. PLoS ONE, 5(7):e11748, 2010. [ DOI|http ]

2009

Marie-Pierre Forquin, Hugo Duvergey, Caroline Proux, Valentin Loux, Jerome Mounier, Sophie Landaud, Jean-Yves Coppée, Jean-François Gibrat, Pascal Bonnarme, Isabelle Martin-Verstraete, and Tatiana Vallaeys. Identification of brevibacteriaceae by multilocus sequence typing and comparative genomic hybridization analyses. Applied and Environmental Microbiology, 75(19):6406-6409, October 2009. [ DOI|http ]

Aleksandr Barinov, Valentin Loux, Amal Hammani, Pierre Nicolas, Philippe Langella, Dusko Ehrlich, Emmanuelle Maguin, and Maarten van de Guchte. Prediction of surface exposed proteins in Streptococcus pyogenes, with a potential application to other Gram-positive bacteria. PROTEOMICS, 9(1):61-73, January 2009. [ DOI|http ]

2008

Jérôme Azé, Lucie Gentils, Claire Toffano-Nioche, Valentin Loux, Jean-François Gibrat, Philippe Bessieres, Céline Rouveirol, Anne Poupon, and Christine Froidevaux. Towards a semi-automatic functional annotation tool based on decision-tree techniques. BMC proceedings, 2 Suppl 4:S3, 2008. [ http ]

2007

Eric Duchaud, Mekki Boussaha, Valentin Loux, Jean-François Bernardet, Christian Michel, Brigitte Kerouault, Stanislas Mondot, Pierre Nicolas, Robert Bossy, Christophe Caron, Philippe Bessieres, Jean-François Gibrat, Stéphane Claverol, Fabien Dumetz, Michel Le Hénaff, and Abdenour Benmansour. Complete genome sequence of the fish pathogen Flavobacterium psychrophilum. Nature biotechnology, 25(7):763-769, July 2007. [ DOI|http ]

2006

M van de Guchte, S Penaud, C Grimaldi, V Barbe, K Bryson, P Nicolas, C Robert, S Oztas, S Mangenot, A Couloux, Valentin Loux, R Dervyn, R Bossy, A Bolotin, J-M Batto, T Walunas, J F Gibrat, P Bessières, J Weissenbach, S D Ehrlich, and E Maguin. The complete genome sequence of Lactobacillus bulgaricus reveals extensive and ongoing reductive evolution. Proceedings of the National Academy of Sciences of the United States of America, 103(24):9274-9279, June 2006. [ DOI|http ]

K Bryson, Valentin Loux, R Bossy, P Nicolas, S Chaillou, M van de Guchte, S Penaud, E Maguin, M Hoebeke, P Bessières, and J F Gibrat. AGMIAL: implementing an annotation strategy for prokaryote genomes as a distributed system. Nucleic Acids Research, 34(12):3533-3545, 2006. [ DOI|http ]

2005

Stéphane Chaillou, Marie-Christine Champomier-Vergès, Monique Cornet, Anne-Marie Crutz-Le Coq, Anne-Marie Dudez, Véronique Martin, Sophie Beaufils, Emmanuelle Darbon-Rongère, Robert Bossy, Valentin Loux, and Monique Zagorec. The complete genome sequence of the meat-borne lactic acid bacterium Lactobacillus sakei 23K. Nature biotechnology, 23(12):1527-1533, December 2005. [ DOI|http ]

 

Contact

Tel : 01 34 65 28 95 Valentin Loux